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A build/Avida.sln
A build/Avida.xcodeproj
A build/Avida.xcodeproj/project.pbxproj
A build/AUTHORS
A build/run_tests
A build/Avida.vcproj
A build/README
A build/Installer
A build/Installer/Installer.vdproj
A build/Installer/README.txt
A build/source
A build/source/actions
A build/source/actions/LandscapeActions.cc
A build/source/actions/PopulationActions.cc
A build/source/actions/DriverActions.cc
A build/source/actions/LandscapeActions.h
A build/source/actions/PopulationActions.h
A build/source/actions/PrintActions.cc
A build/source/actions/DriverActions.h
A build/source/actions/PrintActions.h
A build/source/actions/SaveLoadActions.cc
A build/source/actions/SaveLoadActions.h
A build/source/actions/cAction.h
A build/source/actions/EnvironmentActions.cc
A build/source/actions/cActionLibrary.cc
A build/source/actions/EnvironmentActions.h
A build/source/actions/cActionLibrary.h
A build/source/tools
A build/source/tools/cArgSchema.cc
A build/source/tools/cSchedule.cc
A build/source/tools/cHistogram.cc
A build/source/tools/cSchedule.h
A build/source/tools/tList.h
A build/source/tools/cBlockStruct.cc
A build/source/tools/cTools.cc
A build/source/tools/cHelpAlias.cc
A build/source/tools/cStringList.cc
A build/source/tools/cTools.h
A build/source/tools/cConstSchedule.cc
A build/source/tools/recursive_tests_macros.hh
A build/source/tools/cInitFile.h
A build/source/tools/cMessageDisplay_headers.h
A build/source/tools/functions.h
A build/source/tools/cScaledBlock.h
A build/source/tools/cString.h
A build/source/tools/cFixedCoords.cc
A build/source/tools/cMessageDisplay.cc
A build/source/tools/cHelpEntry.h
A build/source/tools/cBitArray.cc
A build/source/tools/lightweight_test.h
A build/source/tools/cProbSchedule.cc
A build/source/tools/cMerit.cc
A build/source/tools/cStringIterator.cc
A build/source/tools/cIntSum.h
A build/source/tools/cMerit.h
A build/source/tools/cStringIterator.h
A build/source/tools/cHelpManager.h
A build/source/tools/cMessageType.h
A build/source/tools/cHelpType.cc
A build/source/tools/cCoords.h
A build/source/tools/cID.h
A build/source/tools/cDataManager_Base.cc
A build/source/tools/cDoubleSum.cc
A build/source/tools/tUnitTestSuiteRecurser.hh
A build/source/tools/cIndexedBlockStruct.cc
A build/source/tools/cBlockStruct.h
A build/source/tools/cIndexedBlockStruct.h
A build/source/tools/cVerifierSuiteRecurser.h
A build/source/tools/cIntegratedSchedule.cc
A build/source/tools/cDataFileManager.cc
A build/source/tools/cStringUtil.cc
A build/source/tools/cConstSchedule.h
A build/source/tools/cDataFileManager.h
A build/source/tools/cStringUtil.h
A build/source/tools/tArgDataEntry.h
A build/source/tools/cFixedBlock.cc
A build/source/tools/cDataFile.h
A build/source/tools/tHashTable.h
A build/source/tools/cRandom.cc
A build/source/tools/cProbSchedule.h
A build/source/tools/tObjectFactory.h
A build/source/tools/cRandom.h
A build/source/tools/cMessageClosure.h
A build/source/tools/tUnitTestSuite.hh
A build/source/tools/tVector.h
A build/source/tools/tMatrix.h
A build/source/tools/cDataEntry.cc
A build/source/tools/cArgSchema.h
A build/source/tools/tAutoRelease.h
A build/source/tools/tBuffer.h
A build/source/tools/cHelpFullEntry.h
A build/source/tools/cCycleCheck.h
A build/source/tools/cDoubleSum.h
A build/source/tools/cHelpAlias.h
A build/source/tools/cStringList.h
A build/source/tools/cIntegratedSchedule.h
A build/source/tools/cCountTracker.h
A build/source/tools/cString.cc
A build/source/tools/cDataFile.cc
A build/source/tools/cIntegratedScheduleNode.h
A build/source/tools/cRunningAverage.cc
A build/source/tools/cMessageDisplay.h
A build/source/tools/cMessageClass.h
A build/source/tools/cArgContainer.cc
A build/source/tools/recursive_tests_defn_hdrs.hh
A build/source/tools/tDataEntryCommand.h
A build/source/tools/cArgContainer.h
A build/source/tools/tDataEntry.h
A build/source/tools/cDefaultMessageDisplay.cc
A build/source/tools/cFile.cc
A build/source/tools/cUInt.h
A build/source/tools/cChangeList.h
A build/source/tools/tDataManager.h
A build/source/tools/cWeightedIndex.cc
A build/source/tools/tDictionary.h
A build/source/tools/cRefBlock.h
A build/source/tools/cWeightedIndex.h
A build/source/tools/tVerifierSuiteRecurser.hh
A build/source/tools/cHelpType.h
A build/source/tools/cCycleCheck.cc
A build/source/tools/cDataEntry.h
A build/source/tools/cHistogram.h
A build/source/tools/cDataManager_Base.h
A build/source/tools/tArray.h
A build/source/tools/cInitFile.cc
A build/source/tools/recursive_tests_decl_hdrs.hh
A build/source/tools/tSmartArray.h
A build/source/tools/cIntegratedScheduleNode.cc
A build/source/tools/cFlexVar.h
A build/source/tools/tDataEntryBase.h
A build/source/tools/cFixedCoords.h
A build/source/tools/cFixedBlock.h
A build/source/tools/cRunningAverage.h
A build/source/tools/cTopology.h
A build/source/tools/cIntSum.cc
A build/source/tools/cBitArray.h
A build/source/tools/tManagedPointerArray.h
A build/source/tools/tVerifierSuite.hh
A build/source/tools/cChangeList.cc
A build/source/tools/cDefaultMessageDisplay.h
A build/source/tools/cFile.h
A build/source/tools/cHelpManager.cc
A build/source/tools/cUnitTestDemo.cc
A build/source/tools/tMemTrack.h
A build/source/utils
A build/source/utils/hist_map
A build/source/utils/hist_map/hist_map.cc
A build/source/utils/hist_map/hist_map2.cc
A build/source/utils/hist_map/Makefile
A build/source/utils/task_events
A build/source/utils/task_events/task_event_gen.cc
A build/source/utils/task_events/environment.rotate
A build/source/utils/task_events/task_event_gen.old.cc
A build/source/utils/process_map
A build/source/utils/process_map/mypcolor.m
A build/source/utils/process_map/process_map.cc
A build/source/utils/process_map/pcolor_all.m
A build/source/utils/process_map/Makefile
A build/source/utils/matlabify.cc
A build/source/Doxyfile
A build/source/analyze
A build/source/analyze/cAnalyzeJobWorker.cc
A build/source/analyze/cMutationalNeighborhoodResults.h
A build/source/analyze/cAnalyzeJobWorker.h
A build/source/analyze/cAnalyzeFlowCommand.h
A build/source/analyze/cGenotypeBatch.h
A build/source/analyze/cAnalyzeJob.h
A build/source/analyze/cAnalyzeCommandAction.h
A build/source/analyze/cAnalyzeJobQueue.cc
A build/source/analyze/cAnalyze.cc
A build/source/analyze/cAnalyzeCommand.h
A build/source/analyze/cAnalyzeJobQueue.h
A build/source/analyze/cAnalyze.h
A build/source/analyze/cMutationalNeighborhood.cc
A build/source/analyze/cMutationalNeighborhood.h
A build/source/analyze/cAnalyzeFunction.h
A build/source/analyze/cAnalyzeFlowCommandDef.h
A build/source/analyze/cAnalyzeGenotypeTreeStats.cc
A build/source/analyze/cAnalyzeGenotype.cc
A build/source/analyze/cAnalyzeCommandDefBase.h
A build/source/analyze/cAnalyzeGenotypeTreeStats.h
A build/source/analyze/cAnalyzeGenotype.h
A build/source/analyze/tAnalyzeJob.h
A build/source/analyze/cAnalyzeCommandDef.h
A build/source/main
A build/source/main/cWorld.h
A build/source/main/cReactionLib.cc
A build/source/main/cAvidaContext.h
A build/source/main/cPopulation.h
A build/source/main/cPlasticPhenotype.h
A build/source/main/cOrgMessage.h
A build/source/main/cMutationRates.h
A build/source/main/cEnvironment.cc
A build/source/main/cGermline.h
A build/source/main/cReactionResult.h
A build/source/main/cEnvironment.h
A build/source/main/cGenome.cc
A build/source/main/cDeme.h
A build/source/main/cAvidaConfig.h
A build/source/main/nMutation.h
A build/source/main/cOrganism.h
A build/source/main/cInstruction.cc
A build/source/main/avida.h
A build/source/main/cMutationLib.cc
A build/source/main/cPopulationCell.cc
A build/source/main/cBirthChamber.cc
A build/source/main/cLandscape.cc
A build/source/main/cTaskLib.h
A build/source/main/cReactionLib.h
A build/source/main/cLocalMutations.cc
A build/source/main/cStats.cc
A build/source/main/cFitnessMatrix.cc
A build/source/main/cResourceCount.cc
A build/source/main/cFitnessMatrix.h
A build/source/main/cResourceCount.h
A build/source/main/cReaction.cc
A build/source/main/cTaskState.h
A build/source/main/cReaction.h
A build/source/main/cTaskContext.h
A build/source/main/cOrgInterface.h
A build/source/main/cPopulationInterface.cc
A build/source/main/cPhenotype.cc
A build/source/main/cPhenPlastGenotype.h
A build/source/main/cMxCodeArray.cc
A build/source/main/cResourceLib.cc
A build/source/main/cOrgMessagePredicate.h
A build/source/main/avida.cc
A build/source/main/unit_testsuites
A build/source/main/unit_testsuites/config
A build/source/main/unit_testsuites/demo.hello
A build/source/main/cTaskEntry.h
A build/source/main/cResource.cc
A build/source/main/cMutationLib.h
A build/source/main/cTaskLib.cc
A build/source/main/cPopulation.cc
A build/source/main/cReactionRequisite.h
A build/source/main/cMutation.h
A build/source/main/cReactionProcess.h
A build/source/main/cOrgSeqMessage.h
A build/source/main/functional_testsuites
A build/source/main/functional_testsuites/tedious.tail
A build/source/main/functional_testsuites/config
A build/source/main/functional_testsuites/default.tail
A build/source/main/functional_testsuites/demo.tail
A build/source/main/functional_testsuites/default.md5sum
A build/source/main/functional_testsuites/demo.md5sum
A build/source/main/cPhenPlastGenotype.cc
A build/source/main/cDeme.cc
A build/source/main/cAvidaConfig.cc
A build/source/main/cSpatialCountElem.h
A build/source/main/cGenome.h
A build/source/main/cPopulationInterface.h
A build/source/main/cPhenotype.h
A build/source/main/cEventList.h
A build/source/main/cOrgSinkMessage.h
A build/source/main/cWorld.cc
A build/source/main/cResource.h
A build/source/main/cPlasticPhenotype.cc
A build/source/main/cPopulationCell.h
A build/source/main/cBirthChamber.h
A build/source/main/cLandscape.h
A build/source/main/cMutationRates.cc
A build/source/main/cLocalMutations.h
A build/source/main/cStats.h
A build/source/main/cReactionResult.cc
A build/source/main/cSaleItem.h
A build/source/main/cGenomeUtil.cc
A build/source/main/nGeometry.h
A build/source/main/cSpatialCountElem.cc
A build/source/main/cGenomeUtil.h
A build/source/main/cDemeCellEvent.cc
A build/source/main/cEventList.cc
A build/source/main/cDemeCellEvent.h
A build/source/main/cOrganism.cc
A build/source/main/cOrgSourceMessage.h
A build/source/main/cMxCodeArray.h
A build/source/main/MyCodeArrayLessThan.h
A build/source/main/cResourceLib.h
A build/source/main/cSpatialResCount.cc
A build/source/main/nReaction.h
A build/source/main/cSpatialResCount.h
A build/source/main/cInstruction.h
A build/source/main/cEnvReqs.h
A build/source/platform
A build/source/platform/msvc2005
A build/source/platform/msvc2005/pdcurses
A build/source/platform/msvc2005/pdcurses/curses.h
A build/source/platform/msvc2005/pdcurses/pdcurses.lib
A build/source/platform/PlatformExpert.cc
A build/source/platform/cThread.h
A build/source/platform/PlatformExpert.h
A build/source/platform/FloatingPoint.h
A build/source/platform/cConditionVariable.h
A build/source/platform/cRWLock.h
A build/source/platform/platform.h
A build/source/platform/cMutex.h
A build/source/platform/cThread.cc
A build/source/platform/tcmalloc
A build/source/platform/tcmalloc/pagemap.h
A build/source/platform/tcmalloc/system-alloc.cc
A build/source/platform/tcmalloc/system-alloc.h
A build/source/platform/tcmalloc/tcmalloc.cc
A build/source/platform/tcmalloc/tcmalloc-logging.cc
A build/source/platform/tcmalloc/tcmalloc-platform.h
A build/source/platform/tcmalloc/tcmalloc-config.h
A build/source/platform/tcmalloc/spinlock.h
A build/source/platform/tcmalloc/tcmalloc-logging.h
A build/source/cpu
A build/source/cpu/cInstLibEntry.h
A build/source/cpu/cHardwareManager.cc
A build/source/cpu/sCPUStats.h
A build/source/cpu/cHardwareTransSMT.cc
A build/source/cpu/cTestCPU.h
A build/source/cpu/cHardwareManager.h
A build/source/cpu/cInstSet.h
A build/source/cpu/cHardwareGX.cc
A build/source/cpu/cHardwareGX.h
A build/source/cpu/cCPUTestInfo.cc
A build/source/cpu/cHardwareStatusPrinter.h
A build/source/cpu/cHardwareCPU.h
A build/source/cpu/tInstLibEntry.h
A build/source/cpu/nHardware.h
A build/source/cpu/cHeadCPU.h
A build/source/cpu/cCPUStack.cc
A build/source/cpu/cHardwareExperimental.h
A build/source/cpu/cHardwareSMT.cc
A build/source/cpu/cTestCPU.cc
A build/source/cpu/tInstLib.h
A build/source/cpu/cHardwareBase.cc
A build/source/cpu/cInstSet.cc
A build/source/cpu/cHardwareBase.h
A build/source/cpu/cHardwareTransSMT.h
A build/source/cpu/cHardwareTracer.h
A build/source/cpu/cHardwareStatusPrinter.cc
A build/source/cpu/cCPUTestInfo.h
A build/source/cpu/cHardwareCPU.cc
A build/source/cpu/cInstLib.h
A build/source/cpu/cTestCPUInterface.cc
A build/source/cpu/cHeadCPU.cc
A build/source/cpu/cCodeLabel.cc
A build/source/cpu/cTestCPUInterface.h
A build/source/cpu/cHardwareExperimental.cc
A build/source/cpu/cCodeLabel.h
A build/source/cpu/cCPUStack.h
A build/source/cpu/cCPUMemory.cc
A build/source/cpu/cCPUMemory.h
A build/source/cpu/cHardwareSMT.h
A build/source/defs.h
A build/source/targets
A build/source/targets/unit-tests
A build/source/targets/unit-tests/main.cc
A build/source/targets/avida-viewer
A build/source/targets/avida-viewer/cOptionsScreen.h
A build/source/targets/avida-viewer/cStatsScreen.cc
A build/source/targets/avida-viewer/cStatsScreen.h
A build/source/targets/avida-viewer/NOTES
A build/source/targets/avida-viewer/cSymbolUtil.cc
A build/source/targets/avida-viewer/cAnalyzeScreen.h
A build/source/targets/avida-viewer/cTextViewerAnalyzeDriver.cc
A build/source/targets/avida-viewer/cTextViewerAnalyzeDriver.h
A build/source/targets/avida-viewer/cHistScreen.h
A build/source/targets/avida-viewer/cTextWindow.cc
A build/source/targets/avida-viewer/cMapScreen.cc
A build/source/targets/avida-viewer/cTextWindow.h
A build/source/targets/avida-viewer/cTabBox.h
A build/source/targets/avida-viewer/cScreen.h
A build/source/targets/avida-viewer/cZoomScreen.cc
A build/source/targets/avida-viewer/cViewInfo.cc
A build/source/targets/avida-viewer/cZoomScreen.h
A build/source/targets/avida-viewer/cViewInfo.h
A build/source/targets/avida-viewer/cOptionsScreen.cc
A build/source/targets/avida-viewer/cMenuWindow.cc
A build/source/targets/avida-viewer/cAnalyzeView.cc
A build/source/targets/avida-viewer/cMenuWindow.h
A build/source/targets/avida-viewer/viewer.cc
A build/source/targets/avida-viewer/cAnalyzeView.h
A build/source/targets/avida-viewer/cAnalyzeScreen.cc
A build/source/targets/avida-viewer/cBarScreen.cc
A build/source/targets/avida-viewer/cEnvironmentScreen.cc
A build/source/targets/avida-viewer/cSymbolUtil.h
A build/source/targets/avida-viewer/cBarScreen.h
A build/source/targets/avida-viewer/cEnvironmentScreen.h
A build/source/targets/avida-viewer/cView_Base.h
A build/source/targets/avida-viewer/cHistScreen.cc
A build/source/targets/avida-viewer/cBaseTextWindow.h
A build/source/targets/avida-viewer/cView.cc
A build/source/targets/avida-viewer/cTextViewerDriver_Base.cc
A build/source/targets/avida-viewer/cView.h
A build/source/targets/avida-viewer/cTextViewerDriver_Base.h
A build/source/targets/avida-viewer/cScreen.cc
A build/source/targets/avida-viewer/cMapScreen.h
A build/source/targets/avida-viewer/cTextViewerDriver.cc
A build/source/targets/avida-viewer/key_chart
A build/source/targets/avida-viewer/cTextViewerDriver.h
A build/source/targets/avida
A build/source/targets/avida/primitive.cc
A build/source/classification
A build/source/classification/cInjectGenotypeControl.cc
A build/source/classification/cClassificationManager.h
A build/source/classification/cInjectGenotype.h
A build/source/classification/cInjectGenotypeControl.h
A build/source/classification/cGenotype.cc
A build/source/classification/cGenotypeControl.cc
A build/source/classification/cSpecies.cc
A build/source/classification/cInjectGenotypeQueue.cc
A build/source/classification/cGenotype.h
A build/source/classification/cSpeciesControl.cc
A build/source/classification/cGenotypeControl.h
A build/source/classification/cSpecies.h
A build/source/classification/cInjectGenotypeQueue.h
A build/source/classification/cSpeciesControl.h
A build/source/classification/cSpeciesQueue.cc
A build/source/classification/cSpeciesQueue.h
A build/source/classification/cInjectGenotypeElement.h
A build/source/classification/cLineage.cc
A build/source/classification/nInjectGenotype.h
A build/source/classification/cLineage.h
A build/source/classification/nGenotype.h
A build/source/classification/nSpecies.h
A build/source/classification/cInjectGenotype_BirthData.h
A build/source/classification/cGenotype_BirthData.cc
A build/source/classification/cGenotype_BirthData.h
A build/source/classification/cGenotype_TestData.h
A build/source/classification/cClassificationManager.cc
A build/source/classification/cInjectGenotype.cc
A build/source/testsuites
A build/source/testsuites/full-unit-tests.cc
A build/source/testsuites/cInitFile-unit-tests.cc
A build/source/testsuites/CMakeLists.txt
A build/source/drivers
A build/source/drivers/cDriverManager.h
A build/source/drivers/cAvidaDriver.h
A build/source/drivers/cFallbackWorldDriver.cc
A build/source/drivers/cDefaultAnalyzeDriver.cc
A build/source/drivers/cDefaultRunDriver.cc
A build/source/drivers/cFallbackWorldDriver.h
A build/source/drivers/cWorldDriver.h
A build/source/drivers/cDefaultAnalyzeDriver.h
A build/source/drivers/cDriverManager.cc
A build/source/drivers/cDefaultRunDriver.h
A build/tests
A build/tests/demes_germline
A build/tests/demes_germline/expected
A build/tests/demes_germline/expected/data
A build/tests/demes_germline/expected/data/count.dat
A build/tests/demes_germline/expected/data/historic-100.pop
A build/tests/demes_germline/expected/data/dominant.dat
A build/tests/demes_germline/expected/data/archive
A build/tests/demes_germline/expected/data/archive/100-aaaaa.org
A build/tests/demes_germline/expected/data/average.dat
A build/tests/demes_germline/expected/data/tasks_quality.dat
A build/tests/demes_germline/expected/data/stats.dat
A build/tests/demes_germline/expected/data/time.dat
A build/tests/demes_germline/expected/data/tasks.dat
A build/tests/demes_germline/expected/data/detail-100.pop
A build/tests/demes_germline/expected/data/tasks_exe.dat
A build/tests/demes_germline/expected/data/resource.dat
A build/tests/demes_germline/config
A build/tests/demes_germline/config/avida.cfg
A build/tests/demes_germline/config/environment.cfg
A build/tests/demes_germline/config/events.cfg
A build/tests/demes_germline/config/instset-classic.cfg
A build/tests/demes_germline/config/default-classic.org
A build/tests/demes_germline/test_list
A build/tests/demes_clique_repl
A build/tests/demes_clique_repl/expected
A build/tests/demes_clique_repl/expected/data
A build/tests/demes_clique_repl/expected/data/count.dat
A build/tests/demes_clique_repl/expected/data/historic-100.pop
A build/tests/demes_clique_repl/expected/data/dominant.dat
A build/tests/demes_clique_repl/expected/data/archive
A build/tests/demes_clique_repl/expected/data/archive/100-aaaaa.org
A build/tests/demes_clique_repl/expected/data/average.dat
A build/tests/demes_clique_repl/expected/data/tasks_quality.dat
A build/tests/demes_clique_repl/expected/data/stats.dat
A build/tests/demes_clique_repl/expected/data/time.dat
A build/tests/demes_clique_repl/expected/data/tasks.dat
A build/tests/demes_clique_repl/expected/data/detail-100.pop
A build/tests/demes_clique_repl/expected/data/tasks_exe.dat
A build/tests/demes_clique_repl/expected/data/resource.dat
A build/tests/demes_clique_repl/config
A build/tests/demes_clique_repl/config/avida.cfg
A build/tests/demes_clique_repl/config/environment.cfg
A build/tests/demes_clique_repl/config/events.cfg
A build/tests/demes_clique_repl/config/instset-classic.cfg
A build/tests/demes_clique_repl/config/default-classic.org
A build/tests/demes_clique_repl/test_list
A build/tests/green_beard_instructions
A build/tests/green_beard_instructions/expected
A build/tests/green_beard_instructions/expected/data
A build/tests/green_beard_instructions/expected/data/archive
A build/tests/green_beard_instructions/config
A build/tests/green_beard_instructions/config/inst_set.SexDonateGbthreshEdtKinRndNopx
A build/tests/green_beard_instructions/config/envZeroResources.cfg
A build/tests/green_beard_instructions/config/avida.cfg
A build/tests/green_beard_instructions/config/environment.cfg
A build/tests/green_beard_instructions/config/organism.sexDefault
A build/tests/green_beard_instructions/config/eventsFullPopTest.cfg
A build/tests/green_beard_instructions/test_list
A build/tests/demes_hex_repl
A build/tests/demes_hex_repl/expected
A build/tests/demes_hex_repl/expected/data
A build/tests/demes_hex_repl/expected/data/count.dat
A build/tests/demes_hex_repl/expected/data/historic-100.pop
A build/tests/demes_hex_repl/expected/data/dominant.dat
A build/tests/demes_hex_repl/expected/data/archive
A build/tests/demes_hex_repl/expected/data/archive/100-aaaaa.org
A build/tests/demes_hex_repl/expected/data/average.dat
A build/tests/demes_hex_repl/expected/data/tasks_quality.dat
A build/tests/demes_hex_repl/expected/data/stats.dat
A build/tests/demes_hex_repl/expected/data/time.dat
A build/tests/demes_hex_repl/expected/data/tasks.dat
A build/tests/demes_hex_repl/expected/data/detail-100.pop
A build/tests/demes_hex_repl/expected/data/tasks_exe.dat
A build/tests/demes_hex_repl/expected/data/resource.dat
A build/tests/demes_hex_repl/config
A build/tests/demes_hex_repl/config/avida.cfg
A build/tests/demes_hex_repl/config/environment.cfg
A build/tests/demes_hex_repl/config/events.cfg
A build/tests/demes_hex_repl/config/instset-classic.cfg
A build/tests/demes_hex_repl/config/default-classic.org
A build/tests/demes_hex_repl/test_list
A build/tests/energy_deme_level_res
A build/tests/energy_deme_level_res/expected
A build/tests/energy_deme_level_res/expected/data
A build/tests/energy_deme_level_res/expected/data/deme_instruction-0.dat
A build/tests/energy_deme_level_res/expected/data/sleep.dat
A build/tests/energy_deme_level_res/expected/data/deme_instruction-1.dat
A build/tests/energy_deme_level_res/expected/data/dominant.dat
A build/tests/energy_deme_level_res/expected/data/deme_merit.dat
A build/tests/energy_deme_level_res/expected/data/deme_gest_time.dat
A build/tests/energy_deme_level_res/expected/data/average.dat
A build/tests/energy_deme_level_res/expected/data/deme_donor.dat
A build/tests/energy_deme_level_res/expected/data/instruction.dat
A build/tests/energy_deme_level_res/expected/data/deme_spacial_sleep.m
A build/tests/energy_deme_level_res/expected/data/deme_0000000_spacial_energy.m
A build/tests/energy_deme_level_res/expected/data/deme_lifetime_fitness.dat
A build/tests/energy_deme_level_res/expected/data/deme_0000001_spacial_energy.m
A build/tests/energy_deme_level_res/expected/data/tasks.dat
A build/tests/energy_deme_level_res/expected/data/tasks_exe.dat
A build/tests/energy_deme_level_res/expected/data/resource.dat
A build/tests/energy_deme_level_res/expected/data/count.dat
A build/tests/energy_deme_level_res/expected/data/deme_task.dat
A build/tests/energy_deme_level_res/expected/data/deme_mut_rates.dat
A build/tests/energy_deme_level_res/expected/data/deme_receiver.dat
A build/tests/energy_deme_level_res/expected/data/instruction_histogram.dat
A build/tests/energy_deme_level_res/expected/data/stats.dat
A build/tests/energy_deme_level_res/expected/data/time.dat
A build/tests/energy_deme_level_res/expected/data/deme_resources.dat
A build/tests/energy_deme_level_res/expected/data/deme_fitness.dat
A build/tests/energy_deme_level_res/expected/data/deme_spacial_resource_deme_ResB.m
A build/tests/energy_deme_level_res/config
A build/tests/energy_deme_level_res/config/avida.cfg
A build/tests/energy_deme_level_res/config/instset-TEST.cfg
A build/tests/energy_deme_level_res/config/echo40.org
A build/tests/energy_deme_level_res/config/environment-5tasks.cfg
A build/tests/energy_deme_level_res/config/events-ConstResource.cfg
A build/tests/energy_deme_level_res/test_list
A build/tests/demes_grid_repl
A build/tests/demes_grid_repl/expected
A build/tests/demes_grid_repl/expected/data
A build/tests/demes_grid_repl/expected/data/count.dat
A build/tests/demes_grid_repl/expected/data/historic-100.pop
A build/tests/demes_grid_repl/expected/data/dominant.dat
A build/tests/demes_grid_repl/expected/data/archive
A build/tests/demes_grid_repl/expected/data/archive/100-aaaaa.org
A build/tests/demes_grid_repl/expected/data/average.dat
A build/tests/demes_grid_repl/expected/data/tasks_quality.dat
A build/tests/demes_grid_repl/expected/data/stats.dat
A build/tests/demes_grid_repl/expected/data/time.dat
A build/tests/demes_grid_repl/expected/data/tasks.dat
A build/tests/demes_grid_repl/expected/data/detail-100.pop
A build/tests/demes_grid_repl/expected/data/tasks_exe.dat
A build/tests/demes_grid_repl/expected/data/resource.dat
A build/tests/demes_grid_repl/config
A build/tests/demes_grid_repl/config/avida.cfg
A build/tests/demes_grid_repl/config/environment.cfg
A build/tests/demes_grid_repl/config/events.cfg
A build/tests/demes_grid_repl/config/instset-classic.cfg
A build/tests/demes_grid_repl/config/default-classic.org
A build/tests/demes_grid_repl/test_list
A build/tests/default_transsmt_100u
A build/tests/default_transsmt_100u/expected
A build/tests/default_transsmt_100u/expected/data
A build/tests/default_transsmt_100u/expected/data/count.dat
A build/tests/default_transsmt_100u/expected/data/historic-100.pop
A build/tests/default_transsmt_100u/expected/data/dominant.dat
A build/tests/default_transsmt_100u/expected/data/archive
A build/tests/default_transsmt_100u/expected/data/archive/100-aaaaa.org
A build/tests/default_transsmt_100u/expected/data/average.dat
A build/tests/default_transsmt_100u/expected/data/tasks_quality.dat
A build/tests/default_transsmt_100u/expected/data/stats.dat
A build/tests/default_transsmt_100u/expected/data/time.dat
A build/tests/default_transsmt_100u/expected/data/tasks.dat
A build/tests/default_transsmt_100u/expected/data/detail-100.pop
A build/tests/default_transsmt_100u/expected/data/tasks_exe.dat
A build/tests/default_transsmt_100u/expected/data/resource.dat
A build/tests/default_transsmt_100u/config
A build/tests/default_transsmt_100u/config/instset-transsmt.cfg
A build/tests/default_transsmt_100u/config/avida.cfg
A build/tests/default_transsmt_100u/config/environment.cfg
A build/tests/default_transsmt_100u/config/events.cfg
A build/tests/default_transsmt_100u/config/default-transsmt.org
A build/tests/default_transsmt_100u/test_list
A build/tests/bgs_dyn_mutrates_rank
A build/tests/bgs_dyn_mutrates_rank/expected
A build/tests/bgs_dyn_mutrates_rank/expected/data
A build/tests/bgs_dyn_mutrates_rank/expected/data/count.dat
A build/tests/bgs_dyn_mutrates_rank/expected/data/historic-100.pop
A build/tests/bgs_dyn_mutrates_rank/expected/data/divide_mut.dat
A build/tests/bgs_dyn_mutrates_rank/expected/data/dominant.dat
A build/tests/bgs_dyn_mutrates_rank/expected/data/average.dat
A build/tests/bgs_dyn_mutrates_rank/expected/data/creature.final
A build/tests/bgs_dyn_mutrates_rank/expected/data/stats.dat
A build/tests/bgs_dyn_mutrates_rank/expected/data/time.dat
A build/tests/bgs_dyn_mutrates_rank/expected/data/instruction.dat
A build/tests/bgs_dyn_mutrates_rank/expected/data/tasks.dat
A build/tests/bgs_dyn_mutrates_rank/expected/data/detail-100.pop
A build/tests/bgs_dyn_mutrates_rank/expected/data/resource.dat
A build/tests/bgs_dyn_mutrates_rank/config
A build/tests/bgs_dyn_mutrates_rank/config/environment.77
A build/tests/bgs_dyn_mutrates_rank/config/avida.cfg
A build/tests/bgs_dyn_mutrates_rank/config/org.div1
A build/tests/bgs_dyn_mutrates_rank/config/org.div10
A build/tests/bgs_dyn_mutrates_rank/config/org.div100
A build/tests/bgs_dyn_mutrates_rank/config/inst_set.divide
A build/tests/bgs_dyn_mutrates_rank/config/org.div3
A build/tests/bgs_dyn_mutrates_rank/config/org.div32
A build/tests/bgs_dyn_mutrates_rank/config/events-Test-RankSelection.cfg
A build/tests/bgs_dyn_mutrates_rank/test_list
A build/tests/bgs_dyn_mutrates_births
A build/tests/bgs_dyn_mutrates_births/expected
A build/tests/bgs_dyn_mutrates_births/expected/data
A build/tests/bgs_dyn_mutrates_births/expected/data/count.dat
A build/tests/bgs_dyn_mutrates_births/expected/data/historic-100.pop
A build/tests/bgs_dyn_mutrates_births/expected/data/divide_mut.dat
A build/tests/bgs_dyn_mutrates_births/expected/data/dominant.dat
A build/tests/bgs_dyn_mutrates_births/expected/data/average.dat
A build/tests/bgs_dyn_mutrates_births/expected/data/creature.final
A build/tests/bgs_dyn_mutrates_births/expected/data/stats.dat
A build/tests/bgs_dyn_mutrates_births/expected/data/time.dat
A build/tests/bgs_dyn_mutrates_births/expected/data/instruction.dat
A build/tests/bgs_dyn_mutrates_births/expected/data/tasks.dat
A build/tests/bgs_dyn_mutrates_births/expected/data/detail-100.pop
A build/tests/bgs_dyn_mutrates_births/expected/data/resource.dat
A build/tests/bgs_dyn_mutrates_births/config
A build/tests/bgs_dyn_mutrates_births/config/environment.77
A build/tests/bgs_dyn_mutrates_births/config/avida.cfg
A build/tests/bgs_dyn_mutrates_births/config/org.div1
A build/tests/bgs_dyn_mutrates_births/config/org.div10
A build/tests/bgs_dyn_mutrates_births/config/org.div100
A build/tests/bgs_dyn_mutrates_births/config/inst_set.divide
A build/tests/bgs_dyn_mutrates_births/config/org.div3
A build/tests/bgs_dyn_mutrates_births/config/org.div32
A build/tests/bgs_dyn_mutrates_births/config/events-Test-NumBirthsSelection.cfg
A build/tests/bgs_dyn_mutrates_births/test_list
A build/tests/resources_9r
A build/tests/resources_9r/expected
A build/tests/resources_9r/expected/data
A build/tests/resources_9r/expected/data/count.dat
A build/tests/resources_9r/expected/data/historic-100.pop
A build/tests/resources_9r/expected/data/dominant.dat
A build/tests/resources_9r/expected/data/archive
A build/tests/resources_9r/expected/data/archive/067-aaaaa.org
A build/tests/resources_9r/expected/data/average.dat
A build/tests/resources_9r/expected/data/tasks_quality.dat
A build/tests/resources_9r/expected/data/stats.dat
A build/tests/resources_9r/expected/data/time.dat
A build/tests/resources_9r/expected/data/tasks.dat
A build/tests/resources_9r/expected/data/detail-100.pop
A build/tests/resources_9r/expected/data/tasks_exe.dat
A build/tests/resources_9r/expected/data/resource.dat
A build/tests/resources_9r/config
A build/tests/resources_9r/config/9task.org
A build/tests/resources_9r/config/avida.cfg
A build/tests/resources_9r/config/events.cfg
A build/tests/resources_9r/config/environment.9resource
A build/tests/resources_9r/config/instset-classic.cfg
A build/tests/resources_9r/test_list
A build/tests/analyze_truncate_lineage_fulllandscape
A build/tests/analyze_truncate_lineage_fulllandscape/expected
A build/tests/analyze_truncate_lineage_fulllandscape/expected/data
A build/tests/analyze_truncate_lineage_fulllandscape/expected/data/detail.dat
A build/tests/analyze_truncate_lineage_fulllandscape/config
A build/tests/analyze_truncate_lineage_fulllandscape/config/analyze.cfg
A build/tests/analyze_truncate_lineage_fulllandscape/config/detail-50000.pop
A build/tests/analyze_truncate_lineage_fulllandscape/config/avida.cfg
A build/tests/analyze_truncate_lineage_fulllandscape/config/environment.cfg
A build/tests/analyze_truncate_lineage_fulllandscape/config/events.cfg
A build/tests/analyze_truncate_lineage_fulllandscape/config/historic-50000.pop
A build/tests/analyze_truncate_lineage_fulllandscape/config/instset-classic.cfg
A build/tests/analyze_truncate_lineage_fulllandscape/config/default-classic.org
A build/tests/analyze_truncate_lineage_fulllandscape/test_list
A build/tests/demes_classic_torus
A build/tests/demes_classic_torus/expected
A build/tests/demes_classic_torus/expected/data
A build/tests/demes_classic_torus/expected/data/count.dat
A build/tests/demes_classic_torus/expected/data/historic-100.pop
A build/tests/demes_classic_torus/expected/data/dominant.dat
A build/tests/demes_classic_torus/expected/data/archive
A build/tests/demes_classic_torus/expected/data/archive/100-aaaaa.org
A build/tests/demes_classic_torus/expected/data/archive/100-aaaab.org
A build/tests/demes_classic_torus/expected/data/average.dat
A build/tests/demes_classic_torus/expected/data/tasks_quality.dat
A build/tests/demes_classic_torus/expected/data/stats.dat
A build/tests/demes_classic_torus/expected/data/time.dat
A build/tests/demes_classic_torus/expected/data/tasks.dat
A build/tests/demes_classic_torus/expected/data/detail-100.pop
A build/tests/demes_classic_torus/expected/data/tasks_exe.dat
A build/tests/demes_classic_torus/expected/data/resource.dat
A build/tests/demes_classic_torus/config
A build/tests/demes_classic_torus/config/avida.cfg
A build/tests/demes_classic_torus/config/environment.cfg
A build/tests/demes_classic_torus/config/events.cfg
A build/tests/demes_classic_torus/config/instset-classic.cfg
A build/tests/demes_classic_torus/config/default-classic.org
A build/tests/demes_classic_torus/test_list
A build/tests/analyze_truncate_lineage
A build/tests/analyze_truncate_lineage/expected
A build/tests/analyze_truncate_lineage/expected/data
A build/tests/analyze_truncate_lineage/expected/data/detail.dat
A build/tests/analyze_truncate_lineage/config
A build/tests/analyze_truncate_lineage/config/analyze.cfg
A build/tests/analyze_truncate_lineage/config/detail-50000.pop
A build/tests/analyze_truncate_lineage/config/avida.cfg
A build/tests/analyze_truncate_lineage/config/environment.cfg
A build/tests/analyze_truncate_lineage/config/events.cfg
A build/tests/analyze_truncate_lineage/config/historic-50000.pop
A build/tests/analyze_truncate_lineage/config/instset-classic.cfg
A build/tests/analyze_truncate_lineage/config/default-classic.org
A build/tests/analyze_truncate_lineage/test_list
A build/tests/task_sort_analyze
A build/tests/task_sort_analyze/expected
A build/tests/task_sort_analyze/expected/data
A build/tests/task_sort_analyze/expected/data/detail.dat
A build/tests/task_sort_analyze/config
A build/tests/task_sort_analyze/config/analyze.cfg
A build/tests/task_sort_analyze/config/basic-10-sorter.org
A build/tests/task_sort_analyze/config/avida.cfg
A build/tests/task_sort_analyze/config/environment.cfg
A build/tests/task_sort_analyze/config/events.cfg
A build/tests/task_sort_analyze/config/instset-classic.cfg
A build/tests/task_sort_analyze/test_list
A build/tests/optimize_multivar_lim_res
A build/tests/optimize_multivar_lim_res/expected
A build/tests/optimize_multivar_lim_res/expected/data
A build/tests/optimize_multivar_lim_res/expected/data/count.dat
A build/tests/optimize_multivar_lim_res/expected/data/dominant.dat
A build/tests/optimize_multivar_lim_res/expected/data/historic-20.pop
A build/tests/optimize_multivar_lim_res/expected/data/archive
A build/tests/optimize_multivar_lim_res/expected/data/archive/094-aaaaa.org
A build/tests/optimize_multivar_lim_res/expected/data/archive/094-aaaab.org
A build/tests/optimize_multivar_lim_res/expected/data/archive/094-aaaad.org
A build/tests/optimize_multivar_lim_res/expected/data/average.dat
A build/tests/optimize_multivar_lim_res/expected/data/tasks_quality.dat
A build/tests/optimize_multivar_lim_res/expected/data/stats.dat
A build/tests/optimize_multivar_lim_res/expected/data/time.dat
A build/tests/optimize_multivar_lim_res/expected/data/tasks.dat
A build/tests/optimize_multivar_lim_res/expected/data/detail-20.pop
A build/tests/optimize_multivar_lim_res/expected/data/resource.dat
A build/tests/optimize_multivar_lim_res/config
A build/tests/optimize_multivar_lim_res/config/analyze.cfg
A build/tests/optimize_multivar_lim_res/config/avida.cfg
A build/tests/optimize_multivar_lim_res/config/environment.cfg
A build/tests/optimize_multivar_lim_res/config/events.cfg
A build/tests/optimize_multivar_lim_res/config/instset-classic.cfg
A build/tests/optimize_multivar_lim_res/config/default-classic.org
A build/tests/optimize_multivar_lim_res/test_list
A build/tests/sex-asex
A build/tests/sex-asex/expected
A build/tests/sex-asex/expected/data
A build/tests/sex-asex/expected/data/count.dat
A build/tests/sex-asex/expected/data/dominant.dat
A build/tests/sex-asex/expected/data/average.dat
A build/tests/sex-asex/expected/data/stats.dat
A build/tests/sex-asex/expected/data/time.dat
A build/tests/sex-asex/expected/data/tasks.dat
A build/tests/sex-asex/expected/data/resource.dat
A build/tests/sex-asex/config
A build/tests/sex-asex/config/organism.50.sex
A build/tests/sex-asex/config/organism.50.asex
A build/tests/sex-asex/config/avida.cfg
A build/tests/sex-asex/config/environment.cfg
A build/tests/sex-asex/config/events.cfg
A build/tests/sex-asex/config/inst_set.sex.asex
A build/tests/sex-asex/test_list
A build/tests/default_classic_500u
A build/tests/default_classic_500u/expected
A build/tests/default_classic_500u/expected/data
A build/tests/default_classic_500u/expected/data/count.dat
A build/tests/default_classic_500u/expected/data/dominant.dat
A build/tests/default_classic_500u/expected/data/archive
A build/tests/default_classic_500u/expected/data/archive/101-aaade.org
A build/tests/default_classic_500u/expected/data/archive/100-aaaaj.org
A build/tests/default_classic_500u/expected/data/archive/100-aaaaa.org
A build/tests/default_classic_500u/expected/data/archive/101-aaabp.org
A build/tests/default_classic_500u/expected/data/archive/100-aaaae.org
A build/tests/default_classic_500u/expected/data/archive/100-aaaer.org
A build/tests/default_classic_500u/expected/data/archive/100-aaaag.org
A build/tests/default_classic_500u/expected/data/average.dat
A build/tests/default_classic_500u/expected/data/tasks_quality.dat
A build/tests/default_classic_500u/expected/data/stats.dat
A build/tests/default_classic_500u/expected/data/time.dat
A build/tests/default_classic_500u/expected/data/tasks.dat
A build/tests/default_classic_500u/expected/data/tasks_exe.dat
A build/tests/default_classic_500u/expected/data/resource.dat
A build/tests/default_classic_500u/config
A build/tests/default_classic_500u/config/avida.cfg
A build/tests/default_classic_500u/config/environment.cfg
A build/tests/default_classic_500u/config/events.cfg
A build/tests/default_classic_500u/config/instset-classic.cfg
A build/tests/default_classic_500u/config/default-classic.org
A build/tests/default_classic_500u/test_list
A build/tests/energy_asex_1000u
A build/tests/energy_asex_1000u/expected
A build/tests/energy_asex_1000u/expected/data
A build/tests/energy_asex_1000u/expected/data/count.dat
A build/tests/energy_asex_1000u/expected/data/sleep.dat
A build/tests/energy_asex_1000u/expected/data/dominant.dat
A build/tests/energy_asex_1000u/expected/data/average.dat
A build/tests/energy_asex_1000u/expected/data/instruction_histogram.dat
A build/tests/energy_asex_1000u/expected/data/stats.dat
A build/tests/energy_asex_1000u/expected/data/time.dat
A build/tests/energy_asex_1000u/expected/data/instruction.dat
A build/tests/energy_asex_1000u/expected/data/tasks.dat
A build/tests/energy_asex_1000u/expected/data/tasks_exe.dat
A build/tests/energy_asex_1000u/expected/data/resource.dat
A build/tests/energy_asex_1000u/config
A build/tests/energy_asex_1000u/config/avida.cfg
A build/tests/energy_asex_1000u/config/instset-TEST.cfg
A build/tests/energy_asex_1000u/config/echo40.org
A build/tests/energy_asex_1000u/config/environment-5tasks.cfg
A build/tests/energy_asex_1000u/config/events-ConstResource.cfg
A build/tests/energy_asex_1000u/test_list
A build/tests/sex
A build/tests/sex/expected
A build/tests/sex/expected/data
A build/tests/sex/expected/data/count.dat
A build/tests/sex/expected/data/dominant.dat
A build/tests/sex/expected/data/average.dat
A build/tests/sex/expected/data/stats.dat
A build/tests/sex/expected/data/time.dat
A build/tests/sex/expected/data/tasks.dat
A build/tests/sex/expected/data/resource.dat
A build/tests/sex/config
A build/tests/sex/config/organism.50.sex
A build/tests/sex/config/organism.50.asex
A build/tests/sex/config/avida.cfg
A build/tests/sex/config/environment.cfg
A build/tests/sex/config/events.cfg
A build/tests/sex/config/inst_set.sex
A build/tests/sex/test_list
A build/tests/sex-modular
A build/tests/sex-modular/expected
A build/tests/sex-modular/expected/data
A build/tests/sex-modular/expected/data/count.dat
A build/tests/sex-modular/expected/data/dominant.dat
A build/tests/sex-modular/expected/data/average.dat
A build/tests/sex-modular/expected/data/stats.dat
A build/tests/sex-modular/expected/data/time.dat
A build/tests/sex-modular/expected/data/tasks.dat
A build/tests/sex-modular/expected/data/resource.dat
A build/tests/sex-modular/config
A build/tests/sex-modular/config/organism.50.sex
A build/tests/sex-modular/config/organism.50.asex
A build/tests/sex-modular/config/avida.cfg
A build/tests/sex-modular/config/environment.cfg
A build/tests/sex-modular/config/events.cfg
A build/tests/sex-modular/config/inst_set.sex
A build/tests/sex-modular/test_list
A build/tests/string_match_embed3
A build/tests/string_match_embed3/expected
A build/tests/string_match_embed3/expected/data
A build/tests/string_match_embed3/expected/data/count.dat
A build/tests/string_match_embed3/expected/data/historic-100.pop
A build/tests/string_match_embed3/expected/data/dominant.dat
A build/tests/string_match_embed3/expected/data/archive
A build/tests/string_match_embed3/expected/data/archive/091-aaaaa.org
A build/tests/string_match_embed3/expected/data/average.dat
A build/tests/string_match_embed3/expected/data/tasks_quality.dat
A build/tests/string_match_embed3/expected/data/stats.dat
A build/tests/string_match_embed3/expected/data/time.dat
A build/tests/string_match_embed3/expected/data/tasks.dat
A build/tests/string_match_embed3/expected/data/detail-100.pop
A build/tests/string_match_embed3/expected/data/tasks_exe.dat
A build/tests/string_match_embed3/expected/data/resource.dat
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