Log File contents

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./build_avida
 in dir /home/buildslave/avida/avida-dev-alice/build (timeout 1200 secs)
 watching logfiles {}
 argv: ['./build_avida']
 environment:
  CVS_RSH=ssh
  G_BROKEN_FILENAMES=1
  HISTSIZE=1000
  HOME=/home/buildslave
  HOSTNAME=alice.cme.msu.edu
  INPUTRC=/etc/inputrc
  KDEDIR=/usr
  KDE_IS_PRELINKED=1
  KDE_NO_IPV6=1
  LANG=en_US.UTF-8
  LESSOPEN=|/usr/bin/lesspipe.sh %s
  LOGNAME=buildslave
  LS_COLORS=no=00:fi=00:di=00;34:ln=00;36:pi=40;33:so=00;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:ex=00;32:*.cmd=00;32:*.exe=00;32:*.com=00;32:*.btm=00;32:*.bat=00;32:*.sh=00;32:*.csh=00;32:*.tar=00;31:*.tgz=00;31:*.arj=00;31:*.taz=00;31:*.lzh=00;31:*.zip=00;31:*.z=00;31:*.Z=00;31:*.gz=00;31:*.bz2=00;31:*.bz=00;31:*.tz=00;31:*.rpm=00;31:*.cpio=00;31:*.jpg=00;35:*.gif=00;35:*.bmp=00;35:*.xbm=00;35:*.xpm=00;35:*.png=00;35:*.tif=00;35:
  MAIL=/var/spool/mail/root
  PATH=/usr/local/bin:/usr/lib/qt-3.3/bin:/usr/kerberos/sbin:/usr/kerberos/bin:/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin
  PWD=/root
  QTDIR=/usr/lib/qt-3.3
  QTINC=/usr/lib/qt-3.3/include
  QTLIB=/usr/lib/qt-3.3/lib
  SHELL=/bin/bash
  SHLVL=2
  SSH_ASKPASS=/usr/libexec/openssh/gnome-ssh-askpass
  SSH_CLIENT=35.8.120.53 32924 22
  SSH_CONNECTION=35.8.120.53 32924 35.8.164.83 22
  SSH_TTY=/dev/pts/1
  TERM=xterm
  USER=buildslave
  _=/usr/bin/buildbot
 closing stdin
 using PTY: True
-- Configuring done
-- Generating done
-- Build files have been written to: /home/buildslave/avida/avida-dev-alice/build/cbuild
[  3%] Built target tcmalloc
[35m[1mScanning dependencies of target avidacore
[0m[  4%] [  4%] [  5%] [  6%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/actions/DriverActions.o
[0m[  7%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/actions/LandscapeActions.o
[0m[32mBuilding CXX object CMakeFiles/avidacore.dir/source/actions/PopulationActions.o
[0m[32mBuilding CXX object CMakeFiles/avidacore.dir/source/actions/PrintActions.o
[0m[  7%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/actions/SaveLoadActions.o
[  8%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/actions/EnvironmentActions.o
[0m[  9%] [0m[32mBuilding CXX object CMakeFiles/avidacore.dir/source/analyze/cAnalyze.o
[0m[  9%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/analyze/cAnalyzeGenotype.o
[0m[ 10%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/analyze/cAnalyzeTreeStats_CumulativeStemminess.o
[0m[32mBuilding CXX object CMakeFiles/avidacore.dir/source/analyze/cAnalyzeTreeStats_Gamma.o
[0m/home/buildslave/avida/avida-dev-alice/build/source/actions/PopulationActions.cc: In member function ‘virtual void cAction_TherapyStructuralNumInst::Process(cAvidaContext&)’:
/home/buildslave/avida/avida-dev-alice/build/source/actions/PopulationActions.cc:979: warning: passing ‘double’ for argument 1 to ‘void cIntSum::Add(long int, long int)’
/home/buildslave/avida/avida-dev-alice/build/source/actions/PopulationActions.cc: In member function ‘virtual void cAction_TherapyStructuralRatioDistBetweenNearest::Process(cAvidaContext&)’:
/home/buildslave/avida/avida-dev-alice/build/source/actions/PopulationActions.cc:1065: warning: converting to ‘int’ from ‘const double’
/home/buildslave/avida/avida-dev-alice/build/source/actions/PopulationActions.cc:1076: warning: passing ‘double’ for argument 1 to ‘void cIntSum::Add(long int, long int)’
/home/buildslave/avida/avida-dev-alice/build/source/actions/PrintActions.cc: In member function ‘virtual void cActionPrintTaskProbHistogram::Process(cAvidaContext&)’:
/home/buildslave/avida/avida-dev-alice/build/source/actions/PrintActions.cc:1716: warning: converting to ‘int’ from ‘double’
/home/buildslave/avida/avida-dev-alice/build/source/actions/PrintActions.cc:1727: warning: converting to ‘int’ from ‘double’
[ 11%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/analyze/cAnalyzeJobQueue.o
[0m[ 11%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/analyze/cGenotypeBatch.o
[0m[ 12%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/analyze/cModularityAnalysis.o
[0m[ 12%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/analyze/cMutationalNeighborhood.o
[0m[ 13%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/classification/cClassificationManager.o
[0m[ 14%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/classification/cGenotype.o
[0m[ 14%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/classification/cGenotypeControl.o
[0m[ 15%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/classification/cInjectGenotype.o
[0m[ 16%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/classification/cInjectGenotypeControl.o
[0m[ 16%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/classification/cInjectGenotypeQueue.o
[0m[ 17%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/classification/cLineage.o
[0m[ 18%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/classification/cSpecies.o
[0m[ 18%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/classification/cSpeciesControl.o
[0m[ 19%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/classification/cSpeciesQueue.o
[0m[ 20%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/viewer-core/cCoreView_Info.o
[0m[ 21%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/viewer-core/cCoreView_Map.o
[0m[ 21%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/cpu/cCPUMemory.o
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[0m[ 25%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/cpu/cHardwareManager.o
[0m[ 26%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/cpu/cHardwareSMT.o
[0m[ 27%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/cpu/cHardwareStatusPrinter.o
[0m[ 28%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/cpu/cHardwareTransSMT.o
[0m[ 28%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/cpu/cHeadCPU.o
[0m[ 29%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/cpu/cInstSet.o
[0m[ 30%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/cpu/cTestCPU.o
[0m[ 30%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/cpu/cTestCPUInterface.o
[0m[ 31%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/drivers/cDefaultAnalyzeDriver.o
[0m[ 32%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/drivers/cDefaultRunDriver.o
[0m[ 33%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/avida.o
[0m[ 35%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cBirthDemeHandler.o
[0m[ 35%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cAvidaConfig.o
[0m[ 35%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cBirthChamber.o
[0m[ 36%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cBirthGenomeSizeHandler.o
[0m[ 36%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cBirthGlobalHandler.o
[0m[ 37%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cBirthGridLocalHandler.o
[0m[ 38%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cBirthMateSelectHandler.o
[0m[ 39%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cBirthNeighborhoodHandler.o
[0m[ 40%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cDeme.o
[0m[ 41%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cDemeNetwork.o
[0m[ 41%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cDemeTopologyNetwork.o
[0m[ 42%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cDemeCellEvent.o
[0m[ 43%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cEnvironment.o
[0m[ 44%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cEventList.o
[0m[ 44%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cFitnessMatrix.o
[0m[ 45%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cGenome.o
[0m[ 46%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cGenomeUtil.o
[0m[ 47%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cLandscape.o
[0m[ 47%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cMutationRates.o
[0m[ 48%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cMxCodeArray.o
[0m[ 49%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cOrganism.o
[0m[ 49%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cOrgMessage.o
[0m[ 50%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cPhenotype.o
[0m[ 51%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cPhenPlastGenotype.o
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[0m[ 52%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cPopulation.o
[0m[ 53%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cPopulationCell.o
[0m[ 54%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cPopulationInterface.o
[0m[ 55%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cResource.o
[0m[ 55%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cResourceCount.o
[0m[ 56%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cResourceHistory.o
[0m[ 57%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cResourceLib.o
[0m[ 57%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cSpatialResCount.o
[0m[ 58%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cStats.o
[0m[ 59%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cTaskLib.o
[0m[ 59%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/main/cWorld.o
[0m[ 60%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/tools/cDemeProbSchedule.o
[0m[ 60%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/tools/cIntegratedSchedule.o
[0m[ 60%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/tools/cProbDemeProbSchedule.o
[0m[ 61%] [32mBuilding CXX object CMakeFiles/avidacore.dir/source/tools/cProbSchedule.o
[0m/home/buildslave/avida/avida-dev-alice/build/source/main/cWorld.cc: In member function ‘int cWorld::GetNumResourceSpecs()’:
/home/buildslave/avida/avida-dev-alice/build/source/main/cWorld.cc:164: warning: converting to ‘int’ from ‘double’
/home/buildslave/avida/avida-dev-alice/build/source/main/cWorld.cc:165: warning: converting to ‘int’ from ‘double’
[31m[1mLinking CXX static library lib/libavidacore.a
[0m[100%] Built target avidacore
[35m[1mScanning dependencies of target avida
[0m[100%] [32mBuilding CXX object CMakeFiles/avida.dir/source/targets/avida/primitive.o
[0m[31m[1mLinking CXX executable bin/avida
[0m[100%] Built target avida
[  3%] Built target tcmalloc
[100%] Built target avidacore
[100%] Built target avida
[31m[1mLinking CXX executable CMakeFiles/CMakeRelink.dir/avida
[0m[36mInstall the project...
[0m-- Install configuration: "Release"
-- Installing /home/buildslave/avida/avida-dev-alice/build/cbuild/work/analyze.cfg
-- Installing /home/buildslave/avida/avida-dev-alice/build/cbuild/work/avida.cfg
-- Installing /home/buildslave/avida/avida-dev-alice/build/cbuild/work/environment.cfg
-- Installing /home/buildslave/avida/avida-dev-alice/build/cbuild/work/events.cfg
-- Installing /home/buildslave/avida/avida-dev-alice/build/cbuild/work/instset-classic.cfg
-- Installing /home/buildslave/avida/avida-dev-alice/build/cbuild/work/instset-sex-classic.cfg
-- Installing /home/buildslave/avida/avida-dev-alice/build/cbuild/work/instset-smt.cfg
-- Installing /home/buildslave/avida/avida-dev-alice/build/cbuild/work/instset-transsmt.cfg
-- Installing /home/buildslave/avida/avida-dev-alice/build/cbuild/work/default-classic.org
-- Installing /home/buildslave/avida/avida-dev-alice/build/cbuild/work/default-sex-classic.org
-- Installing /home/buildslave/avida/avida-dev-alice/build/cbuild/work/default-smt.org
-- Installing /home/buildslave/avida/avida-dev-alice/build/cbuild/work/default-transsmt.org
-- Installing /home/buildslave/avida/avida-dev-alice/build/cbuild/work/avida
program finished with exit code 0