#Finding a clade that coalesces to a given candidate ancestor defined by variable "a"

VERBOSE
SET_BATCH 0
PURGE_BATCH
SET e CD3LOSSY100KEV5KPR_ECOSTBL #CD3LOSSY100KEV5KPR5KRST_FULL
SET t 104999 
SET f endpress #"era" of clade
SYSTEM gunzip *.$t.gz

   PURGE_BATCH
   SET s 2400
   SET a 140231
   LOAD $e_$s_detail_pop.$t
   LOAD $e_$s_historic_dump.$t
   FIND_CLADE $a
   RECALCULATE
   DETAIL $e_$s_EQUclade_$f.$a.txt id parent_id num_cpus total_cpus update_born update_dead depth parent_dist length gest_time efficiency fitness task.0 task.1 task.2 task.3 task.4 task.5 task.6 task.7 task.8 sequence


SYSTEM gzip *.$t

END

#Tracing a lineage from a given genotype back to the seed ancestor
VERBOSE
SET_BATCH 0

SET d CD3LOSSY100KEVNOPRESS_ECOSTBL 
SET s 2000
SET t 200000

   SYSTEM gunzip $d_$s_historic_dump.$t.gz
   SYSTEM gunzip $d_$s_detail_pop.$t.gz
   PURGE_BATCH
   LOAD $d_$s_detail_pop.$t
   LOAD $d_$s_historic_dump.$t
   SET a 3349445
   FIND_LINEAGE $a
   RECALCULATE

   DETAIL $d_$s_lineage.$a.txt id parent_id num_cpus total_cpus update_born update_dead depth parent_dist length gest_time efficiency fitness task.0 task.1 task.2 task.3 task.4 task.5 task.6 task.7 task.8 sequence

SYSTEM gzip $d_$s_detail_pop.$t
SYSTEM gzip $d_$s_historic_dump.$t

END